(517) 353 0368

  • Github
  • Twitter
  • Linkedin
  • Research Gate

mansfeld@msu.edu

  • Home

  • My Research

  • Publications

  • Software

  • Blog

  • More

    Reproducing Yang et al. - Chr1 Joint Genotyping

    March 9, 2017

    Reproducing Yang et al - HaplotypeCaller

    March 8, 2017

    Reproducing Yang et al - BQSR

    March 6, 2017

    Please reload

    Archive

    March 2017

    February 2017

    December 2016

    November 2016

    October 2016

    May 2016

    Please reload

    Tags

    AddOrReplaceReadGroups

    Aspera

    BAM

    BQSR

    BWA

    Bootstrapping

    ENA

    FASTX

    FastAlternativeReferenceMaker

    FastQC

    GATK

    GenotypeGVCF

    HaplotypeCaller

    INDELs

    Joint Genotyping

    Nipponbare

    Picard

    PicardTools

    QTLseq

    Read Groups

    SNPs

    SRA

    SelectVariants

    Sequencing

    Trimmomatic

    VariantFiltration

    automation

    bioinformatics

    bwa

    dbSNP

    download from SRA

    fasta

    fastq

    ftp

    g.vcf

    hpcc

    parallel

    qsub

    reproducing

    rice

    samTools

    samtools

    unix

    Please reload

    Recent Posts

    Downloading from SRA

    February 28, 2017

    I wanted to download some data to reproduce results from a paper. 

    Downloading from SRA sounds easy but it is actually really not straightforward...

    I started by just downloading the files it took more than 10hrs and the read names were all messed up.... something didn't...

    Read More
    Please reload

    mansfeld@msu.edu

    Plant Soil Science Bldg 1066 Bogue St., East Lansing Michigan

    • Github
    • twitter
    • linkedin
    • generic-social-link

    ©2016 by Ben Mansfeld. Proudly created with Wix.com